species:   Artha
pid:       MI0005413
parent:    ath-MIR854b
paralog:   
locus:     5:11324370-11324590
matures:   ['GAUGAGGAUAGGGAGGAGGAG', 'UCUCUUCUACCACAGCUAUUCCG']
srr:       SRR9216050
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216050.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216050.cram 5:11324370-11324590

11 out of bounds
9 alignments
1 proper strand
1 stranded perfect matches

***********************                                                                                                                                                                             *************************
CGGAUGAGGAUAGGGAGGAGGAGUAUGAUACGAGCAUGUAUCAUUUCAGUGAGCACGUACCUCCAGCGCGGGAGAGCAAGAGCUUGAGUGAAGCUCACAGAAACAACAGUAAGUUGCAGAGGUGGUGCAAGAAACAAGAUAGGUUACUUAUCAAGUGCUUCAAGGCCAUCACGUUUCUGACGGACAAGAUAAGUUGCUUCUCUUCUACCACAGCUAUUCCG
((((..((.....((((((((((((((((((......)))))).........((((.((((((....((......))..((((((.....)))))).......((((.....))))..)))))))))).................(((((((..((.(.(((((((......)))).))).).))..))))))))))))))))))).......))..))))
--GAUGAGGAUAGGGAGGAGGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ l=21 a=0 c
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCUCUUCUACCACAGCUAUUCCG l=23 a=0 c*
------------------------------CGAGCAUGUAUCAUUUCAGUGAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=24 a=1 ma
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCUCUUCUACCACAGCUAUUCCG l=23 a=0 ma*

------------------------------CGAGCAUGUAUCAUUUCAGUGAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=24 a=1 (ma)

mb-00010
ax-1001011
ku-01
ss-100111001100
fn-001
